Preprints

Ramstetter MD, Dyer TD, et al. A performance assessment of relatedness inference methods using genome-wide data from thousands of relatives. bioRxiv, Jun 2017.

Published manuscripts

Williams AL, Genovese G, Dyer T, et al. for the T2D-GENES Consortium. Non-crossover gene conversions show strong allelic bias and unexpected clustering in humans. eLife 2015;4:e04637, Apr 2015.

The SIGMA Type 2 Diabetes Consortium: Estrada K, Aukrust I, Bjørkhaug L, Burtt NP, Mercader JM, García-Ortiz H, Huerta-Chagoya A, Moreno-Macías H, Walford G, Flannick J, Williams AL*, et al. Association of a low-frequency variant in HNF1A with type 2 diabetes in a Latino population. JAMA 311(22):2305-14, Jun 2014.
* Preformed sample selection for exome sequencing and contributed to association analyses

The SIGMA Type 2 Diabetes Consortium: Williams AL, Jacobs SBR, Moreno-Macías H, et al. Sequence variants in SLC16A11 are a common risk factor for type 2 diabetes in Mexico. Nature 506:97-101, Feb 2014.
Led the genetics analysis and wrote the genetics portions of paper.

The 1000 Genomes Project Consortium. An integrated map of genetic variation from 1,092 human genomes. Nature 491:56-65, Nov 2012.
Developed HAPMIX extension and applied it to the Latino populations.

Williams AL, Patterson N, Glessner J, Hakonarson H, Reich D. Phasing Many Thousands of Genotyped Samples. Am J Hum Genet, 91:238-51, Aug 2012.

Fejerman L, Chen GK, Eng C, Huntsman S, Hu D, Williams A, Pasaniuc B, John EM, Via M, Gignoux C, Ingles S, Monroe KR, Kolonel LN, Torres-Mejía G, Pérez-Stable EJ, Burchard EG, Henderson BE, Haiman CA, Ziv E. Admixture mapping identifies a locus on 6q25 associated with breast cancer risk in US Latinas. Hum Mol Genet, 21:1907-17, Apr 2012.

Williams AL, Housman DE, Rinard MC, Gifford DK. Rapid Haplotype Inference for Nuclear Families. Genome Biol, 11:R108, Oct 2010.

Williams A, Thies W, Ernst MD. Static Deadlock Detection for Java Libraries. European Conference on Object-Oriented Programming (ECOOP). Glasgow, Scotland, UK. Jul 2005.

Williams A, Barrus S, Morley K, Shirley P. An efficient and robust ray-box intersection algorithm. Journal of Graphics Tools, 10:49-54, Jun 2005.